About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9155013_9155389_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9155013 - 9155389
Intron Length:
377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTAAACCATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTTACTAAACC
Flanking Amino Acid:
DKKLEEIPKYKDLLKLFTTM
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
77.6
32.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
60
0.23
1
56
39.7
Minor 5ss
35.7
-1.6
3.2
45.3
36.6
Minor BPS
62.7
0.38
1.9
75.23
41.5

Associated Gene:

Gene:
PSMD12
Ensembl Gene ID:
ENSAPLG00000007388
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007702
9149799 - 9157529
7731