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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9155565_9156092_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9155565 - 9156092
Intron Length:
528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTACACATAACC
Flanking Amino Acid:
KDLKNRVVEHNIRIMAKYYT
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.8
34.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
82.6
0.73
0.9
74.2
39.6
Minor 5ss
41.8
-0.9
2.8
56.1
41.3
Minor BPS
56.8
0.19
1.8
71.56
38.4

Associated Gene:

Gene:
PSMD12
Ensembl Gene ID:
ENSAPLG00000007388
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007702
9149799 - 9157529
7731