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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9156171_9157318_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9156171 - 9157318
Intron Length:
1148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
GTTTTCTTGACT
Flanking Amino Acid:
MAQLLDLSVDESEEFLSNLV
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
89.7
0.89
0.7
84.7
30.1
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
82.1
1.09
1
91.69
30.7

Associated Gene:

Gene:
PSMD12
Ensembl Gene ID:
ENSAPLG00000007388
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007702
9149799 - 9157529
7731