About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9162556_9184326_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9162556 - 9184326
Intron Length:
21771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCCG
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
ACTTGCTGATTT
Flanking Amino Acid:
MTVLGEGLAKGD
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.8
75.3
40.8
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
79.8
0.67
1
73.4
41.3
Minor 5ss
34.5
-1.8
2.8
42.1
44.5
Minor BPS
47.2
-0.1
2.1
66.83
44.3

Associated Gene:

Gene:
HELZ
Ensembl Gene ID:
ENSAPLG00000007762
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033006
9162549 - 9244830
82282