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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9188559_9191496_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9188559 - 9191496
Intron Length:
2938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTGA
5'SS Class:
strong_major
3'SS Sequence:
CTATTTTATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTTCCTATTT
Flanking Amino Acid:
TSSEEYTLCKRFLEQGICRY
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
77.4
33.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.1
0.61
0.9
73.9
35.6
Minor 5ss
38.9
-1.2
2.9
49.9
46.3
Minor BPS
60.1
0.4
1.9
84.08
37

Associated Gene:

Gene:
HELZ
Ensembl Gene ID:
ENSAPLG00000007762
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034062
9178964 - 9237477
58514
ENSAPLT00000033006
9162549 - 9244830
82282
ENSAPLT00000008118
9178964 - 9244830
65867