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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9199656_9204322_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9199656 - 9204322
Intron Length:
4667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTACTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CATCTATTAATT
Flanking Amino Acid:
LNLRADCEMQVELQFQLNRL
Intron Amino Acid Position:
588

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
79.8
0.67
0.8
75.1
34.6
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
57.3
0.31
1.6
71.42
39.5

Associated Gene:

Gene:
HELZ
Ensembl Gene ID:
ENSAPLG00000007762
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034062
9178964 - 9237477
58514
ENSAPLT00000033006
9162549 - 9244830
82282
ENSAPLT00000008118
9178964 - 9244830
65867