Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9207710_9214509_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9207710 - 9214509

Intron Length:

6800

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATTTTTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTATTTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

CCCTTTTTATTT

Flanking Amino Acid:

EAGNPQARPLRVYFRNRWVK

Intron Amino Acid Position:

725

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

82.4

30.8

Major BPS

96.5

1.15

0.6

34.2

Major PPT

87.9

0.85

0.7

81.4

35.9

Minor 5ss

58.1

0.27

2.3

39.6

Minor BPS

50.4

0.09

1.6

61.8

43.8

Associated Gene:

Gene:

HELZ

Ensembl Gene ID:

ENSAPLG00000007762

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033006

9162549 - 9244830

82282

ENSAPLT00000008118

9178964 - 9244830

65867