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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9216391_9218271_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9216391 - 9218271
Intron Length:
1881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
GTGTCTGTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
ATTTAGTTACAC
Flanking Amino Acid:
RIVLAGDHMQLSPFVYSEFA
Intron Amino Acid Position:
825

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
75.3
0.57
1
68.3
42.2
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
44.7
-0.4
2.4
63.02
42.1

Associated Gene:

Gene:
HELZ
Ensembl Gene ID:
ENSAPLG00000007762
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008118
9178964 - 9244830
65867
ENSAPLT00000034062
9178964 - 9237477
58514
ENSAPLT00000033006
9162549 - 9244830
82282