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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9222616_9223579_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9222616 - 9223579
Intron Length:
964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTTGTTTCATT
Flanking Amino Acid:
VSVERVLNVQGKQFRVLFLS
Intron Amino Acid Position:
984

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.9
87
30
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
80.8
0.69
0.8
78.8
34.4
Minor 5ss
37
-1.5
2.8
43.1
43.9
Minor BPS
57.4
0.31
2.2
82.98
39.3

Associated Gene:

Gene:
HELZ
Ensembl Gene ID:
ENSAPLG00000007762
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033006
9162549 - 9244830
82282
ENSAPLT00000008118
9178964 - 9244830
65867
ENSAPLT00000034062
9178964 - 9237477
58514