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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9223809_9228164_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9223809 - 9228164
Intron Length:
4356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTTAT
5'SS Class:
major
3'SS Sequence:
ATTGTTTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTCTAAAAA
Flanking Amino Acid:
PIALCSIGRCRKFWERFIAL
Intron Amino Acid Position:
1060

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
77
34.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
74.6
0.55
0.8
69.6
36.2
Minor 5ss
40.9
-1
3.1
58.4
46.1
Minor BPS
61
0.34
1.8
72.99
38.7

Associated Gene:

Gene:
HELZ
Ensembl Gene ID:
ENSAPLG00000007762
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034062
9178964 - 9237477
58514
ENSAPLT00000033006
9162549 - 9244830
82282
ENSAPLT00000008118
9178964 - 9244830
65867