Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9228370_9232235_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9228370 - 9232235

Intron Length:

3866

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAGTTT

5'SS Class:

strong_major

3'SS Sequence:

TTCCTCTTTTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATCAT

U12 Branch Point Sequence:

TTACTATTATCA

Flanking Amino Acid:

TTKQQQSPPKGKVHLHNQND

Intron Amino Acid Position:

1129

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

81.9

32.1

Major BPS

88.2

0.95

0.9

88.3

28.5

Major PPT

0.63

82.6

26.4

Minor 5ss

-0.9

3.5

64.1

47.4

Minor BPS

50.5

0.01

1.8

66.84

Associated Gene:

Gene:

HELZ

Ensembl Gene ID:

ENSAPLG00000007762

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033006

9162549 - 9244830

82282

ENSAPLT00000008118

9178964 - 9244830

65867

ENSAPLT00000034062

9178964 - 9237477

58514