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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9235854_9236370_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9235854 - 9236370
Intron Length:
517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TACATGTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
AATTTCTTACAT
Flanking Amino Acid:
DKEQHEQSRNGKSETTVGPE
Intron Amino Acid Position:
1281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71
35.7
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
72.5
0.51
0.9
69.5
41.2
Minor 5ss
35.2
-1.7
2.8
40.6
40.8
Minor BPS
60.5
0.41
1.7
76.59
39.6

Associated Gene:

Gene:
HELZ
Ensembl Gene ID:
ENSAPLG00000007762
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034062
9178964 - 9237477
58514
ENSAPLT00000033006
9162549 - 9244830
82282
ENSAPLT00000008118
9178964 - 9244830
65867