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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9238078_9239221_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9238078 - 9239221
Intron Length:
1144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCAATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTTTCTTGATA
Flanking Amino Acid:
TEDETEATYSRFQDLLRELS
Intron Amino Acid Position:
1576

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
79.8
33.2
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
72.8
0.51
1
66.3
38.7
Minor 5ss
44.8
-0.6
3.2
66.9
44.3
Minor BPS
80.4
0.95
0.9
85.58
26.2

Associated Gene:

Gene:
HELZ
Ensembl Gene ID:
ENSAPLG00000007762
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033006
9162549 - 9244830
82282
ENSAPLT00000008118
9178964 - 9244830
65867