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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9254229_9254976_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9254229 - 9254976
Intron Length:
748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAGGG
5'SS Class:
major
3'SS Sequence:
CATCTTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
GGTTATTCAACC
Flanking Amino Acid:
KPASMFYTFAGLCIIISVEV
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
54.3
43.3
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
80.7
0.69
0.8
77.5
30.8
Minor 5ss
28.1
-2.5
3.5
38.5
46.5
Minor BPS
54.4
0.12
1.7
65.58
39.4

Associated Gene:

Gene:
CACNG1
Ensembl Gene ID:
ENSAPLG00000009102
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009470
9254002 - 9265144
11143