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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9255115_9257130_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9255115 - 9257130
Intron Length:
2016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
ACATTCACAATT
Flanking Amino Acid:
SEIFEVTTQKEYSISAAAIA
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88
25.3
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
82.6
0.73
1
80.6
37
Minor 5ss
38
-1.3
3.1
51.9
44.9
Minor BPS
48.1
-0
1.8
64.1
40.4

Associated Gene:

Gene:
CACNG1
Ensembl Gene ID:
ENSAPLG00000009102
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009470
9254002 - 9265144
11143