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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9257206_9264903_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9257206 - 9264903
Intron Length:
7698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
ACAAAATTAAAT
Flanking Amino Acid:
KGCGPISLPGEQTCSYFKHF
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
80.9
33.4
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
94.1
0.99
0.5
92.8
16.8
Minor 5ss
34.9
-1.7
2.8
43.6
43.5
Minor BPS
45.9
-0.2
1.9
60.22
42.1

Associated Gene:

Gene:
CACNG1
Ensembl Gene ID:
ENSAPLG00000009102
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009470
9254002 - 9265144
11143