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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9274938_9279462_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9274938 - 9279462
Intron Length:
4525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
ATCTCCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAT
U12 Branch Point Sequence:
TGCTTCCTATCT
Flanking Amino Acid:
YDHDSSEYLLRIVRASSVFP
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.3
75.4
37.3
Major BPS
72.5
0.56
1.2
75
39.9
Major PPT
79.9
0.67
0.8
73.8
30.5
Minor 5ss
45.6
-0.5
2.8
62.8
42
Minor BPS
51.4
0.12
2
72.9
43.9

Associated Gene:

Gene:
CACNG4
Ensembl Gene ID:
ENSAPLG00000009131
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009496
9273027 - 9310492
37466