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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9320759_9328451_R

Intron Information:

Intron Rank:
130725
Intron Class:
major
Intron Phase:
Intron Coordinates:
9320759 - 9328451
Intron Length:
7693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCCTCTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
TTTGACAAAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.9
31.6
Major BPS
62
0.3
1
62.3
30.4
Major PPT
69.3
0.43
1
72.7
31.7
Minor 5ss
33.8
-1.8
3.7
49.2
47.3
Minor BPS
46.2
-0.2
2.1
64.97
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017566
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025831
9320236 - 9328875
8640