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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9343022_9343391_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9343022 - 9343391
Intron Length:
370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGGTG
5'SS Class:
major
3'SS Sequence:
CTCTCCCCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAGCCAT
U12 Branch Point Sequence:
TTTTTCTTCTCT
Flanking Amino Acid:
FSAISFLLTESAGVMSVYLF
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.1
60.8
43.9
Major BPS
44.7
-0.3
1.5
50.2
45.2
Major PPT
78.8
0.65
0.7
69.6
31.2
Minor 5ss
31.8
-2.1
3.8
46.5
48.8
Minor BPS
47.7
-0
3.6
87.15
38.9

Associated Gene:

Gene:
CACNG5
Ensembl Gene ID:
ENSAPLG00000009163
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009540
9342764 - 9345248
2485