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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9343538_9343970_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9343538 - 9343970
Intron Length:
433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TGTTTCTCACTG
Flanking Amino Acid:
FVSGIFFILSGLSLVVGLVL
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
77.8
38.7
Major BPS
85
0.87
0.8
85.6
23
Major PPT
77.7
0.62
0.8
69.4
36.9
Minor 5ss
31.6
-2.1
2.7
34.1
41.4
Minor BPS
49.6
-0.1
1.9
59.72
42.6

Associated Gene:

Gene:
CACNG5
Ensembl Gene ID:
ENSAPLG00000009163
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009540
9342764 - 9345248
2485