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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9379784_9382238_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9379784 - 9382238
Intron Length:
2455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGATAG
5'SS Class:
major
3'SS Sequence:
TCTTCTTTGGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
GGGTAATCATTT
Flanking Amino Acid:
SKEAVSICKGLMTKHPAKRL
Intron Amino Acid Position:
582

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
64.7
37.9
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
78
0.63
0.9
76.7
31.9
Minor 5ss
31.4
-2.1
3
30
43
Minor BPS
39.4
-0.7
2
52.33
42

Associated Gene:

Gene:
PRKCA
Ensembl Gene ID:
ENSAPLG00000009329
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032439
9378577 - 9524846
146270
ENSAPLT00000023898
9378577 - 9524846
146270
ENSAPLT00000009837
9351009 - 9524846
173838