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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9382347_9383909_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9382347 - 9383909
Intron Length:
1563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAA
U12 Branch Point Sequence:
TTATTTTTAACA
Flanking Amino Acid:
VLLYEMLAGQPPFDGEDEDE
Intron Amino Acid Position:
546

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
67.7
0.44
1
58.3
38.4
Major PPT
83.9
0.76
0.9
81.2
35
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
80.5
0.95
1
83.59
30.1

Associated Gene:

Gene:
PRKCA
Ensembl Gene ID:
ENSAPLG00000009329
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032439
9378577 - 9524846
146270
ENSAPLT00000023898
9378577 - 9524846
146270
ENSAPLT00000009837
9351009 - 9524846
173838