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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9383991_9390100_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9383991 - 9390100
Intron Length:
6110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TGTGATTATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATTAT
U12 Branch Point Sequence:
GTCTGTGTGATT
Flanking Amino Acid:
CGTPDYIAPEIIAYQPYGKS
Intron Amino Acid Position:
519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
69.6
0.49
1.2
60.1
46.3
Major PPT
72.4
0.5
1
65.5
44.4
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
43.6
-0.4
2.3
62.54
42.7

Associated Gene:

Gene:
PRKCA
Ensembl Gene ID:
ENSAPLG00000009329
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032439
9378577 - 9524846
146270
ENSAPLT00000023898
9378577 - 9524846
146270
ENSAPLT00000009837
9351009 - 9524846
173838