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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9390817_9392390_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9390817 - 9392390
Intron Length:
1574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTGTT
5'SS Class:
major
3'SS Sequence:
TTTTTTCATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATACAG
Flanking Amino Acid:
QVGKFKEPQAVFYAAEISVG
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
74.3
36.2
Major BPS
100
1.24
0.5
100
0
Major PPT
89
0.88
0.8
85
28.8
Minor 5ss
35.2
-1.7
3.5
49.9
46.4
Minor BPS
49.3
-0.1
2
65.16
42.5

Associated Gene:

Gene:
PRKCA
Ensembl Gene ID:
ENSAPLG00000009329
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023898
9378577 - 9524846
146270
ENSAPLT00000009837
9351009 - 9524846
173838
ENSAPLT00000032439
9378577 - 9524846
146270