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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_939525_940403_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
939525 - 940403
Intron Length:
879

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTGTT
5'SS Class:
major
3'SS Sequence:
GGTTGCGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTGAT
U12 Branch Point Sequence:
CTTCCGGTGATG
Flanking Amino Acid:
DVVAKMIAQKVDNAQAFVWL
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
79.1
34.5
Major BPS
53.7
0.09
1.4
46.5
47
Major PPT
70
0.45
1
61.7
44.4
Minor 5ss
41.1
-1
3.1
58.6
46
Minor BPS
41.1
-0.8
2.6
51.25
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021474
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029885
938547 - 943864
5318