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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9395460_9395918_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9395460 - 9395918
Intron Length:
459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
AAGATTTTCACT
Flanking Amino Acid:
MVLGKGSFGKVMLADRKGTE
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
87
0.83
0.8
83.9
31
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
48.5
-0
1.7
63.43
41.1

Associated Gene:

Gene:
PRKCA
Ensembl Gene ID:
ENSAPLG00000009329
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023898
9378577 - 9524846
146270
ENSAPLT00000009837
9351009 - 9524846
173838
ENSAPLT00000032439
9378577 - 9524846
146270