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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9416023_9416116_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9416023 - 9416116
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
TGCTTCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTGCATTGAAA
Flanking Amino Acid:
LNPHWNESFTFKLKPTDKDR
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
78.8
30.7
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
82.4
0.73
0.7
81
31.1
Minor 5ss
46.3
-0.4
2.8
64.1
41.5
Minor BPS
56.2
0.19
1.9
72.9
38.6

Associated Gene:

Gene:
PRKCA
Ensembl Gene ID:
ENSAPLG00000009329
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032439
9378577 - 9524846
146270
ENSAPLT00000023898
9378577 - 9524846
146270
ENSAPLT00000009837
9351009 - 9524846
173838