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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9466708_9521894_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9466708 - 9521894
Intron Length:
55187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
GCAATCCTAACT
Flanking Amino Acid:
GFGKQGFQCQVCCFVVHKRC
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
72.3
39.5
Major BPS
72
0.55
1
71.8
31.4
Major PPT
83.1
0.74
0.7
77
31.7
Minor 5ss
38.2
-1.3
3.1
50.1
46.5
Minor BPS
51.9
0.14
1.7
66.98
43.1

Associated Gene:

Gene:
PRKCA
Ensembl Gene ID:
ENSAPLG00000009329
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023898
9378577 - 9524846
146270
ENSAPLT00000009837
9351009 - 9524846
173838
ENSAPLT00000032439
9378577 - 9524846
146270