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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9521927_9524673_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9521927 - 9524673
Intron Length:
2747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTTTTTATTT
Flanking Amino Acid:
TFCSHCTDFIWGFGKQGFQC
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
0.9
74.7
35.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89
0.88
0.7
85.5
27.9
Minor 5ss
31.5
-2.1
3.2
39.8
40.4
Minor BPS
64.6
0.54
1.5
79.7
37

Associated Gene:

Gene:
PRKCA
Ensembl Gene ID:
ENSAPLG00000009329
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023898
9378577 - 9524846
146270
ENSAPLT00000009837
9351009 - 9524846
173838
ENSAPLT00000032439
9378577 - 9524846
146270