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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9538915_9541794_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9538915 - 9541794
Intron Length:
2880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
AGTATTTTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TAAGATTTAATT
Flanking Amino Acid:
KWPLNTLLCLPVTCPPPSLS
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1.3
74.1
38.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
74.9
0.56
0.9
66.4
44.5
Minor 5ss
36
-1.6
2.7
37.8
40.1
Minor BPS
57.3
0.31
1.6
70.78
40.4

Associated Gene:

Gene:
APOH
Ensembl Gene ID:
ENSAPLG00000010266
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039662
9538073 - 9543440
5368