Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9541199_9541794_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9541199 - 9541794

Intron Length:

596

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAC|GTACGTGTT

5'SS Class:

major

3'SS Sequence:

AGTATTTTTCTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAT

U12 Branch Point Sequence:

TAAGATTTAATT

Flanking Amino Acid:

KWSGSVPQCQPVTCPPPSLS

Intron Amino Acid Position:

139

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.9

0.52

1.3

76.4

39.6

Major BPS

90.7

1.01

0.7

19.9

Major PPT

74.9

0.56

0.9

66.4

44.5

Minor 5ss

38.9

-1.2

3.6

56.6

41.6

Minor BPS

57.3

0.31

1.6

70.78

40.4

Associated Gene:

Gene:

APOH

Ensembl Gene ID:

ENSAPLG00000010266

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033773

9538073 - 9543440

5368

ENSAPLT00000010709

9538073 - 9544183

6111