About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9541984_9542346_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9541984 - 9542346
Intron Length:
363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTACCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATAAT
U12 Branch Point Sequence:
TTTTTTGTACCA
Flanking Amino Acid:
GTWSNIPECRAVTCPAPSGI
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
83.8
27.2
Major BPS
72.6
0.56
1.2
72.3
40.4
Major PPT
79.3
0.66
0.9
73.7
35.7
Minor 5ss
35.4
-1.7
2.8
44.9
43.2
Minor BPS
51.7
0.05
2.2
73.92
38.7

Associated Gene:

Gene:
APOH
Ensembl Gene ID:
ENSAPLG00000010266
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010709
9538073 - 9544183
6111
ENSAPLT00000039662
9538073 - 9543440
5368
ENSAPLT00000033773
9538073 - 9543440
5368