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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9542527_9543027_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9542527 - 9543027
Intron Length:
501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATATA
5'SS Class:
strong_major
3'SS Sequence:
TACTCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTGCTTTTAACT
Flanking Amino Acid:
GNWSTKPTCKEPCKMPVKKA
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
82.1
30.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
85.2
0.79
0.8
79.6
32
Minor 5ss
44.8
-0.6
2.7
59.5
45.1
Minor BPS
74.6
0.85
1.2
84.67
36

Associated Gene:

Gene:
APOH
Ensembl Gene ID:
ENSAPLG00000010266
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039662
9538073 - 9543440
5368
ENSAPLT00000033773
9538073 - 9543440
5368
ENSAPLT00000010709
9538073 - 9544183
6111