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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9543226_9544112_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9543226 - 9544112
Intron Length:
887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GTTATTTTAACC
Flanking Amino Acid:
GNLTLPACFKERGFFSTLVK
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
67.4
39.1
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
77.1
0.61
0.9
73.6
35.7
Minor 5ss
30.6
-2.2
3.5
42.6
44.4
Minor BPS
71.2
0.64
1.2
75.38
34.7

Associated Gene:

Gene:
APOH
Ensembl Gene ID:
ENSAPLG00000010266
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010709
9538073 - 9544183
6111