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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9549890_9550863_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9549890 - 9550863
Intron Length:
974

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATC
5'SS Class:
strong_major
3'SS Sequence:
AAATTTATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATTTTTTAAAA
Flanking Amino Acid:
PHVLKLQHRSERQRCALWIK
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
87.7
26.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
70.9
0.47
1
67.9
42.3
Minor 5ss
39.6
-1.2
2.9
54
43.3
Minor BPS
71.8
0.68
1.3
77.35
32.8

Associated Gene:

Gene:
CEP112
Ensembl Gene ID:
ENSAPLG00000010644
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011137
9549790 - 9707784
157995