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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9551965_9559432_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9551965 - 9559432
Intron Length:
7468

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CTA|GCAACATCA
5'SS Class:
weak_major
3'SS Sequence:
TTTTGTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTCGTTTGACT
Flanking Amino Acid:
KISSKEELSLDHHKKNTALD
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.5
0.04
1.3
49.2
41.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
86.8
0.83
0.9
84.6
36
Minor 5ss
35.3
-1.7
4.1
49.8
41.6
Minor BPS
64.3
0.53
1.8
84.49
36.3

Associated Gene:

Gene:
CEP112
Ensembl Gene ID:
ENSAPLG00000010644
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011137
9549790 - 9707784
157995