Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9578812_9580706_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9578812 - 9580706

Intron Length:

1895

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAACT

5'SS Class:

strong_major

3'SS Sequence:

ATCTTTGCTACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAA

U12 Branch Point Sequence:

GTTTGTTAAAGT

Flanking Amino Acid:

QQKHDTDVQKILDRKNDEIE

Intron Amino Acid Position:

200

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.1

1.02

0.7

87.2

Major BPS

75.2

0.63

1.1

75.9

36.3

Major PPT

78.9

0.65

0.9

72.7

37.1

Minor 5ss

36.1

-1.6

50.2

45.8

Minor BPS

47.6

-0.1

2.3

71.8

45.5

Associated Gene:

Gene:

CEP112

Ensembl Gene ID:

ENSAPLG00000010644

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011137

9549790 - 9707784

157995