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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9580807_9581878_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9580807 - 9581878
Intron Length:
1072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATTTTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTTTGACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TATCTCTTGAAT
Flanking Amino Acid:
EETIRKLEKKVQTLVRESQV
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
85.8
25.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
81.5
0.71
0.9
78.9
33.1
Minor 5ss
40.8
-1
3
58.4
46.2
Minor BPS
64.4
0.53
1.4
78.56
37

Associated Gene:

Gene:
CEP112
Ensembl Gene ID:
ENSAPLG00000010644
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011137
9549790 - 9707784
157995