About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9583260_9586511_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9583260 - 9586511
Intron Length:
3252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TTTATTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGTTTTTTAACA
Flanking Amino Acid:
EDYLEQIKSTNQTVKSLEAR
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
82
32.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
86.3
0.82
0.7
85.7
28.8
Minor 5ss
48.3
-0.1
2.8
72.9
37.4
Minor BPS
80.4
0.95
1
83.49
30.3

Associated Gene:

Gene:
CEP112
Ensembl Gene ID:
ENSAPLG00000010644
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011137
9549790 - 9707784
157995