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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9587127_9587538_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9587127 - 9587538
Intron Length:
412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTTC
5'SS Class:
weak_major
3'SS Sequence:
TAAAACTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TTTCTGTTAAAA
Flanking Amino Acid:
KQEHALSAAKASDMIEELQH
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
74.9
36.3
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
70.2
0.46
1
61.8
43.6
Minor 5ss
65.8
0.53
2.2
76
40.1
Minor BPS
55.5
0.17
2.1
73.75
37.7

Associated Gene:

Gene:
CEP112
Ensembl Gene ID:
ENSAPLG00000010644
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011137
9549790 - 9707784
157995