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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9588634_9604806_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
9588634 - 9604806
Intron Length:
16173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTATGCAAC
5'SS Class:
weak_major
3'SS Sequence:
TGTGACTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTTTCTGTGACT
Flanking Amino Acid:
YTVLCTFLRLLEKEEQLTRV
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.3
0.27
1.2
58.3
40.7
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
72
0.49
0.9
62.5
44
Minor 5ss
48.7
-0.1
2.6
70
40.6
Minor BPS
68.2
0.65
2
90.81
33.2

Associated Gene:

Gene:
CEP112
Ensembl Gene ID:
ENSAPLG00000010644
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011137
9549790 - 9707784
157995