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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9662812_9666636_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9662812 - 9666636
Intron Length:
3825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTACC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TGTTACTGATGA
Flanking Amino Acid:
CSQKLAKSSQIIAELKATIS
Intron Amino Acid Position:
725

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
78.8
35.5
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
86.6
0.82
0.7
85.4
29.4
Minor 5ss
35.6
-1.6
2.9
46
42.3
Minor BPS
45.9
-0.3
2.1
62.27
43.3

Associated Gene:

Gene:
CEP112
Ensembl Gene ID:
ENSAPLG00000010644
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011137
9549790 - 9707784
157995