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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9755667_9755950_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9755667 - 9755950
Intron Length:
284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATACG
5'SS Class:
strong_major
3'SS Sequence:
TCCCCTCCCCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
GCTTTTCTAACC
Flanking Amino Acid:
SERQNKHKPHSTQSTKKAYS
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
36.9
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
61.9
0.27
1
59.6
30.2
Minor 5ss
35.4
-1.7
2.7
43.2
43.8
Minor BPS
58
0.23
1.7
67.01
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011112
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011585
9755234 - 9762758
7525