About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9756924_9758146_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9756924 - 9758146
Intron Length:
1223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAAAAAT
U12 Branch Point Sequence:
TTTTGTTTTACA
Flanking Amino Acid:
PFCNASLTTEDHKEPKKLPV
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
80.7
33.7
Major BPS
48
-0.1
1.2
53.6
38.7
Major PPT
92.5
0.96
0.7
87.5
30
Minor 5ss
37.5
-1.4
3
47.9
41.8
Minor BPS
61.2
0.34
2.1
78.96
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011112
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011585
9755234 - 9762758
7525