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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9790255_9796729_F

Intron Information:

Intron Rank:
132862
Intron Class:
major
Intron Phase:
Intron Coordinates:
9790255 - 9796729
Intron Length:
6475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
AAATTCTCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.8
0.9
78.5
32
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
77.9
0.63
0.8
69.4
36.9
Minor 5ss
38.2
-1.3
3.1
52.1
45.1
Minor BPS
51
0.11
1.8
68.77
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021470
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024729
9789727 - 9796944
7218