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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9869595_9870574_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
9869595 - 9870574
Intron Length:
980

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTATGTATT
5'SS Class:
weak_major
3'SS Sequence:
TCATCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
TTTGCCTTCATC
Flanking Amino Acid:
DPEFWDLNAKLVEVPTRMRV
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
76.8
37.9
Major BPS
75
0.62
1.1
77.2
36
Major PPT
82.4
0.73
0.8
76.8
31.5
Minor 5ss
52.4
0.08
2.5
78.4
35.5
Minor BPS
65.8
0.48
1.8
77.77
38.8

Associated Gene:

Gene:
RGS9
Ensembl Gene ID:
ENSAPLG00000011394
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027941
9860321 - 9892037
31717
ENSAPLT00000026953
9860321 - 9875186
14866
ENSAPLT00000012020
9860321 - 9892037
31717