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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9870689_9872914_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9870689 - 9872914
Intron Length:
2226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
GATTTGCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAGAT
U12 Branch Point Sequence:
TTTTGCTGGATT
Flanking Amino Acid:
SRVKSSVSLGGLVKYSEQFL
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1
75.3
40.8
Major BPS
67.4
0.43
1.1
63.4
42.8
Major PPT
77.2
0.61
1
69.8
41.2
Minor 5ss
36.4
-1.5
2.9
43.6
43.3
Minor BPS
60.2
0.4
2
83.71
37.6

Associated Gene:

Gene:
RGS9
Ensembl Gene ID:
ENSAPLG00000011394
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026953
9860321 - 9875186
14866
ENSAPLT00000012020
9860321 - 9892037
31717
ENSAPLT00000027941
9860321 - 9892037
31717