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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9872977_9873611_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9872977 - 9873611
Intron Length:
635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTAAC
5'SS Class:
strong_major
3'SS Sequence:
TGATCCCTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGTTTCTGATCC
Flanking Amino Acid:
KKTMDVYRREIMYYQQAIMK
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1.1
81.4
32.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
73.4
0.53
0.9
70
36.2
Minor 5ss
41.6
-0.9
2.6
54
43.3
Minor BPS
59
0.26
1.7
71.83
39.1

Associated Gene:

Gene:
RGS9
Ensembl Gene ID:
ENSAPLG00000011394
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027941
9860321 - 9892037
31717
ENSAPLT00000026953
9860321 - 9875186
14866
ENSAPLT00000012020
9860321 - 9892037
31717