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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9879002_9879370_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9879002 - 9879370
Intron Length:
369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
CTGCTCCTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CTGCTCCTAACA
Flanking Amino Acid:
RAYWLVNRTPPGMLDVLEYG
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71.3
40.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
71
0.47
0.9
65.8
34.7
Minor 5ss
38
-1.4
2.8
52.3
44.3
Minor BPS
54.7
0.14
1.7
64.98
41.4

Associated Gene:

Gene:
RGS9
Ensembl Gene ID:
ENSAPLG00000011394
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027941
9860321 - 9892037
31717
ENSAPLT00000012020
9860321 - 9892037
31717