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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9881264_9881655_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9881264 - 9881655
Intron Length:
392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCACACTAACT
Flanking Amino Acid:
RKGILEEYEKEHYNMLNKKI
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
100
1.24
0.5
100
0
Major PPT
86.4
0.82
0.8
78.6
39.1
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
55.5
0.25
2
79.07
42.4

Associated Gene:

Gene:
RGS9
Ensembl Gene ID:
ENSAPLG00000011394
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027941
9860321 - 9892037
31717
ENSAPLT00000012020
9860321 - 9892037
31717